Dumped on 2003-9-20.

Index of database - ome


Table: public.actual_inputs

public.actual_inputs Structure
F-Key Name Type Description
actual_input_id serialNOT NULL PRIMARY KEY
public -> module_executions input_module_execution_id integerNOT NULL
public -> formal_inputs formal_input_id integerNOT NULL
public -> module_executions module_execution_id integerNOT NULL

Index - Schema public


Table: public.analysis_chain_executions

public.analysis_chain_executions Structure
F-Key Name Type Description
analysis_chain_execution_id serialNOT NULL PRIMARY KEY
public -> experimenters experimenter_id integerNOT NULL
public -> datasets dataset_id integerNOT NULL
public -> analysis_chains analysis_chain_id integerNOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.analysis_chain_links

public.analysis_chain_links Structure
F-Key Name Type Description
analysis_chain_link_id serialNOT NULL PRIMARY KEY
public -> formal_inputs to_input integerNOT NULL
public -> analysis_chain_nodes to_node integerNOT NULL
public -> formal_outputs from_output integerNOT NULL
public -> analysis_chains analysis_chain_id integerNOT NULL
public -> analysis_chain_nodes from_node integerNOT NULL

Index - Schema public


Table: public.analysis_chain_nodes

public.analysis_chain_nodes Structure
F-Key Name Type Description
analysis_chain_node_id serialNOT NULL PRIMARY KEY
iterator_tag character varying(128)
new_feature_tag character varying(128)
public -> analysis_chains analysis_chain_id integerNOT NULL
public -> modules module_id integerNOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.analysis_chains

public.analysis_chains Structure
F-Key Name Type Description
analysis_chain_id serialNOT NULL PRIMARY KEY
locked booleanNOT NULL
description text
public -> experimenters owner integerNOT NULL
name character varying(64)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.analysis_node_executions

public.analysis_node_executions Structure
F-Key Name Type Description
analysis_node_execution_id serialNOT NULL PRIMARY KEY
public -> analysis_chain_nodes analysis_chain_node_id integerNOT NULL
public -> analysis_chain_executions analysis_chain_execution_id integerNOT NULL
public -> module_executions module_execution_id integerNOT NULL

Index - Schema public


Table: public.analysis_path_map

public.analysis_path_map Structure
F-Key Name Type Description
public -> analysis_chain_nodes analysis_chain_node_id integerNOT NULL
public -> analysis_paths path_id integerNOT NULL
path_order integerNOT NULL

Index - Schema public


Table: public.analysis_paths

public.analysis_paths Structure
F-Key Name Type Description
path_id serialNOT NULL PRIMARY KEY
path_length integerNOT NULL
public -> analysis_chains analysis_chain_id integerNOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.arcs

public.arcs Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
light_source integer
power real
type text
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.bintest

public.bintest Structure
F-Key Name Type Description
id integer
bin bytea

Index - Schema public


Table: public.bounds

public.bounds Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
height integer
x integer
public -> features feature_id integerNOT NULL
width integer
y integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.channel_components

public.channel_components Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
color_domain text
index integer
public -> images image_id integerNOT NULL
logical_channel integer
public -> module_executions module_execution_id integer
pixels_id integer

Index - Schema public


Table: public.configuration

public.configuration Structure
F-Key Name Type Description
var_id serialNOT NULL PRIMARY KEY
value character varying(256)
configuration_id integer
name character varying(256)

Index - Schema public


Table: public.data_columns

public.data_columns Structure
F-Key Name Type Description
data_column_id serialNOT NULL PRIMARY KEY
reference_type character varying(64)
description text
column_name character varying(64)NOT NULL
public -> data_tables data_table_id integerNOT NULL
sql_type character varying(64)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.data_tables

public.data_tables Structure
F-Key Name Type Description
data_table_id serialNOT NULL PRIMARY KEY
table_name character varying(64)NOT NULL
description text
granularity character(1)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.datasets

public.datasets Structure
F-Key Name Type Description
dataset_id serialNOT NULL PRIMARY KEY
locked booleanNOT NULL
description text
public -> experimenters owner_id integerNOT NULL
public -> groups group_id integer
name character varying(256)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.detectors

public.detectors Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
serial_number text
instrument integer
public -> module_executions module_execution_id integer
d_offset real
manufacturer text
gain real
voltage real
type text
model text

Index - Schema public


Table: public.dichroics

public.dichroics Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
manufacturer text
lot_number text
filter integer
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.display_channels

public.display_channels Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
gamma real
black_level integer
channel_number integer
public -> images image_id integerNOT NULL
public -> module_executions module_execution_id integer
white_level integer

Index - Schema public


Table: public.display_options

public.display_options Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
z_stop integer
red_on boolean
z_start integer
blue_on boolean
public -> module_executions module_execution_id integer
t_start integer
green_on boolean
red_channel integer
public -> images image_id integerNOT NULL
blue_channel integer
t_stop integer
color_map text
grey_channel integer
display_rgb boolean
zoom real
green_channel integer

Index - Schema public


Table: public.display_roi

public.display_roi Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
x0 integer
x1 integer
public -> module_executions module_execution_id integer
y0 integer
y1 integer
display_options integer
z0 integer
z1 integer
public -> images image_id integerNOT NULL
t0 integer
t1 integer

Index - Schema public


Table: public.emission_filters

public.emission_filters Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
manufacturer text
lot_number text
filter integer
type text
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.excitation_filters

public.excitation_filters Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
manufacturer text
lot_number text
filter integer
type text
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.experimenter_group_map

public.experimenter_group_map Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
experimenter_id integer
group_id integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.experimenters

public.experimenters Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
ome_name character varying(30)UNIQUE
lastname character varying(30)
password character varying(64)
group_id integer
module_execution_id integer
institution character varying(256)
data_dir character varying(256)
firstname character varying(30)
email character varying(50)

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.experiments

public.experiments Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
description text
type text
public -> module_executions module_execution_id integer
experimenter integer

Index - Schema public


Table: public.extent

public.extent Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
form_factor real
volume integer
sigma_x integer
sigma_y integer
max_x integer
sigma_z integer
max_y integer
max_z integer
min_x integer
min_y integer
public -> module_executions module_execution_id integer
perimeter real
surface_area real
min_z integer
public -> features feature_id integerNOT NULL

Index - Schema public


Table: public.features

public.features Structure
F-Key Name Type Description
feature_id serialNOT NULL PRIMARY KEY
public -> features parent_feature_id integer
public -> images image_id integerNOT NULL
tag character varying(128)NOT NULL
name character varying(128)

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.filaments

public.filaments Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
light_source integer
power real
type text
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.filter

public.filter Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
instrument integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.filter_sets

public.filter_sets Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
manufacturer text
lot_number text
filter integer
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.find_spots_inputs

public.find_spots_inputs Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
channel integer
time_start integer
min_volume real
threshold_type text
time_stop integer
public -> module_executions module_execution_id integer
threshold_value real

Index - Schema public


Table: public.formal_inputs

public.formal_inputs Structure
F-Key Name Type Description
formal_input_id serialNOT NULL PRIMARY KEY
description text
public -> lookup_tables lookup_table_id integer
list boolean
user_defined boolean
optional boolean
public -> semantic_types semantic_type_id integerNOT NULL
name character varying(64)NOT NULL
public -> modules module_id integerNOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.formal_outputs

public.formal_outputs Structure
F-Key Name Type Description
formal_output_id serialNOT NULL PRIMARY KEY
description text
feature_tag character varying(128)
list boolean
optional boolean
public -> semantic_types semantic_type_id integer
name character varying(64)NOT NULL
public -> modules module_id integerNOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.groups

public.groups Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
public -> experimenters leader integer
public -> experimenters contact integer
module_execution_id integer
name character varying(30)

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.image_dataset_map

public.image_dataset_map Structure
F-Key Name Type Description
public -> images image_id integerNOT NULL
public -> datasets dataset_id integerNOT NULL

Index - Schema public


Table: public.image_dimensions

public.image_dimensions Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
pixel_size_t real
public -> images image_id integerNOT NULL
pixel_size_x real
pixel_size_y real
public -> module_executions module_execution_id integer
pixel_size_c real
pixel_size_z real

Index - Schema public


Table: public.image_files_xyzwt

public.image_files_xyzwt Structure
F-Key Name Type Description
path character varying(256)
z_stop smallint
z_start smallint
x_start smallint
host character varying(256)
x_stop smallint
bigendian boolean
t_start smallint
url character varying(256)
y_stop smallint
y_start smallint
public -> images image_id integer
t_stop smallint
w_start smallint
file_sha1 character(40)
w_stop smallint

Index - Schema public


Table: public.image_info

public.image_info Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
objective integer
experiment integer
public -> images image_id integerNOT NULL
instrument integer
group_id integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.image_pixels

public.image_pixels Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
path text
size_x integer
size_y integer
size_z integer
repository integer
public -> module_executions module_execution_id integer
bits_per_pixel integer
pixel_type text
size_c integer
public -> images image_id integerNOT NULL
size_t integer
file_sha1 text

Index - Schema public


Table: public.image_plates

public.image_plates Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
plate integer
public -> images image_id integerNOT NULL
well text
sample integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.images

public.images Structure
F-Key Name Type Description
image_id serialNOT NULL PRIMARY KEY
inserted timestamp with time zoneNOT NULL
description text
image_guid character varying(256)
public -> experimenters experimenter_id integerNOT NULL
created timestamp with time zoneNOT NULL
public -> groups group_id integer
pixels_id integer
name character varying(256)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.imaging_environments

public.imaging_environments Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
air_pressure real
public -> images image_id integerNOT NULL
temperature real
humidity real
co2_percent real
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.instruments

public.instruments Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
serial_number text
manufacturer text
orientation text
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.lasers

public.lasers Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
wavelength integer
light_source integer
pulse text
public -> module_executions module_execution_id integer
pump integer
freq_dbld boolean
medium text
type text
tunable boolean
power real

Index - Schema public


Table: public.light_sources

public.light_sources Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
serial_number text
manufacturer text
instrument integer
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.location

public.location Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
x real
public -> features feature_id integerNOT NULL
y real
z real
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.logical_channels

public.logical_channels Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
pinhole_size integer
otf integer
detector integer
name text
light_wavelength integer
public -> images image_id integerNOT NULL
nd_filter real
aux_light_attenuation real
filter integer
fluor text
aux_light_source integer
samples_per_pixel integer
light_attenuation real
detector_gain real
em_wave integer
photometric_interpretation text
light_source integer
detector_offset real
ex_wave integer
public -> module_executions module_execution_id integer
illumination_type text
aux_light_wavelength integer
mode text
contrast_method text
aux_technique text

Index - Schema public


Table: public.lookup_table_entries

public.lookup_table_entries Structure
F-Key Name Type Description
lookup_table_entry_id serialNOT NULL PRIMARY KEY
public -> lookup_tables lookup_table_id integerNOT NULL
label text
value textNOT NULL

Index - Schema public


Table: public.lookup_tables

public.lookup_tables Structure
F-Key Name Type Description
lookup_table_id serialNOT NULL PRIMARY KEY
description text
name character varying(64)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.module_categories

public.module_categories Structure
F-Key Name Type Description
category_id serialNOT NULL PRIMARY KEY
description text
public -> module_categories parent_category_id integer
name character varying(64)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.module_executions

public.module_executions Structure
F-Key Name Type Description
module_execution_id serialNOT NULL PRIMARY KEY
error_message text
attribute_create_time double precision
total_time double precision
public -> datasets dataset_id integerNOT NULL
public -> modules module_id integer
status character varying(16)
dependence character(1)NOT NULL
attribute_sort_time double precision
timestamp timestamp with time zone
attribute_db_time double precision

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.modules

public.modules Structure
F-Key Name Type Description
module_id serialNOT NULL PRIMARY KEY
public -> module_categories category integer
location character varying(128)NOT NULL
description text
module_type character varying(128)NOT NULL
execution_instructions text
name character varying(64)NOT NULL
default_iterator character varying(128)
new_feature_tag character varying(128)

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.objectives

public.objectives Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
serial_number text
manufacturer text
lens_na real
instrument integer
magnification real
public -> module_executions module_execution_id integer
model text

Index - Schema public


Table: public.ome_sessions

public.ome_sessions Structure
F-Key Name Type Description
session_id serialNOT NULL PRIMARY KEY
public -> projects project_id integer
host character varying(256)
public -> experimenters experimenter_id integerNOT NULL
image_view text
module_execution_id integer
public -> datasets dataset_id integer
feature_view text
started timestamp with time zone
last_access timestamp with time zone

Index - Schema public


Table: public.otfs

public.otfs Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
path text
size_x integer
pixel_type text
size_y integer
optical_axis_average boolean
objective integer
filter integer
instrument integer
repository integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.plane_statistics

public.plane_statistics Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
minimum integer
mean real
maximum integer
geosigma real
sigma real
geomean real
the_c integer
centroid_x real
the_t integer
centroid_y real
public -> module_executions module_execution_id integer
the_z integer
public -> images image_id integerNOT NULL
sum_i2 real
sum_i real
sum_log_i real
sum_xi real
sum_yi real
sum_zi real

Index - Schema public


Table: public.plate_screen_map

public.plate_screen_map Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
plate integer
screen integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.plates

public.plates Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
screen integer
external_reference text
public -> module_executions module_execution_id integer
name text

Index - Schema public


Table: public.project_dataset_map

public.project_dataset_map Structure
F-Key Name Type Description
public -> projects project_id integerNOT NULL
public -> datasets dataset_id integerNOT NULL

Index - Schema public


Table: public.projects

public.projects Structure
F-Key Name Type Description
project_id serialNOT NULL PRIMARY KEY
view character varying(64)
description text
public -> experimenters owner_id integerNOT NULL
public -> groups group_id integer
name character varying(64)NOT NULL

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.ratio

public.ratio Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
ratio real
public -> features feature_id integerNOT NULL
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.repositories

public.repositories Structure
F-Key Name Type Description
"path" UNIQUE
attribute_id serialNOT NULL PRIMARY KEY
path character varying(256)NOT NULL
module_execution_id integer

Index - Schema public


Table: public.screens

public.screens Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
description text
external_reference text
public -> module_executions module_execution_id integer
name text

Index - Schema public


Table: public.semantic_elements

public.semantic_elements Structure
F-Key Name Type Description
semantic_element_id serialNOT NULL PRIMARY KEY
description text
public -> data_columns data_column_id integerNOT NULL
public -> semantic_types semantic_type_id integerNOT NULL
name character varying(64)NOT NULL

Index - Schema public


Table: public.semantic_type_outputs

public.semantic_type_outputs Structure
F-Key Name Type Description
semantic_type_output_id serialNOT NULL PRIMARY KEY
public -> module_executions semantic_type_id integerNOT NULL
public -> module_executions module_execution_id integerNOT NULL

Index - Schema public


Table: public.semantic_types

public.semantic_types Structure
F-Key Name Type Description
semantic_type_id serialNOT NULL PRIMARY KEY
description text
granularity character(1)NOT NULL
name character varying(64)NOT NULL UNIQUE

Tables referencing this one via Foreign Key Constraints:

Index - Schema public


Table: public.signal

public.signal Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
mean real
background real
geosigma real
sigma real
geomean real
the_c integer
integral real
centroid_x real
centroid_y real
public -> module_executions module_execution_id integer
centroid_z real
public -> features feature_id integerNOT NULL

Index - Schema public


Table: public.stack_statistics

public.stack_statistics Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
minimum integer
mean real
maximum integer
geosigma real
sigma real
geomean real
the_c integer
centroid_x real
the_t integer
centroid_y real
public -> module_executions module_execution_id integer
centroid_z real
public -> images image_id integerNOT NULL

Index - Schema public


Table: public.stage_labels

public.stage_labels Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
x real
public -> images image_id integerNOT NULL
y real
z real
public -> module_executions module_execution_id integer
name text

Index - Schema public


Table: public.threshold

public.threshold Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
public -> features feature_id integerNOT NULL
threshold integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.thumbnails

public.thumbnails Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
path text
public -> images image_id integerNOT NULL
repository integer
public -> module_executions module_execution_id integer
mime_type text

Index - Schema public


Table: public.timepoint

public.timepoint Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
public -> features feature_id integerNOT NULL
the_t integer
public -> module_executions module_execution_id integer

Index - Schema public


Table: public.trajectory

public.trajectory Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
total_distance real
public -> features feature_id integerNOT NULL
public -> module_executions module_execution_id integer
average_velocity real
name text

Index - Schema public


Table: public.trajectory_entry

public.trajectory_entry Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
entry_order integer
trajectory integer
delta_x real
public -> module_executions module_execution_id integer
delta_y real
delta_z real
distance real
velocity real
public -> features feature_id integerNOT NULL

Index - Schema public


Table: public.viewer_preferences

public.viewer_preferences Structure
F-Key Name Type Description
attribute_id serialNOT NULL PRIMARY KEY
public -> experimenters experimenter_id integerNOT NULL
toolbox_scale real

Index - Schema public


Function: public.oid( bigint )

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